Mindfully Healthy Living

  • All Recipes
  • NEST With Natalie
  • About
  • Subscribe
  • Dessert
menu icon
go to homepage
  • All Recipes
  • NEST With Natalie
  • About
  • Subscribe
  • Dessert
    • Facebook
    • Instagram
    • Pinterest
  • subscribe
    search icon
    Homepage link
    • All Recipes
    • NEST With Natalie
    • About
    • Subscribe
    • Dessert
    • Facebook
    • Instagram
    • Pinterest
  • ×
    Home » Recipes and Wellness Guides » Breakfast

    Clean Keto Breakfast Casserole

    Last Updated: Nov 18, 2025 by Natalie Perry · This post may contain affiliate links · 2 Comments

    9 shares
    • Facebook
    • Twitter
    • Email
    • Print
    • LinkedIn
    ↓ Jump to Recipe
    ↓ Jump to Video

    Meal prep breakfast for the week with a Clean Keto Breakfast Casserole. It's perfect for those busy mornings when you want a nutritious, easy breakfast recipe without the hassle. It's a delicious mix of turkey sausage, uncured bacon, baby spinach, onions, red bell peppers, and pepper jack cheese. Add salsa or a splash of hot sauce for a spicy finish.

    A white ceramic baking dish with a keto breakfast casserole, showing the baked casserole with a square piece being lifted out with a spatula, revealing the layers of egg, cheese, meat, and vegetables. this …

    This keto casserole really hits the spot and gives me energy throughout the day. I love creating easy low-carb recipes like Keto Chicken and Rice Casserole, Keto Green Chile Chicken Casserole, and Cheesy Keto Italian Stuffed Peppers.

    Include it in your free guide to a Clean Keto Diet and Meal Plan!

    Before getting started, I always recommend taking a moment to set healthy intentions. For tips on how to manifest using intentions and affirmations, check out my free guide.

    Find Us More Often in Your Searches

    Hit the button, then hit the 'Save' (Star icon) on the Google page to personalize your searches to include this site more often in your results.

    + Add as Preferred Source

    ⚡ Quick Look: Keto Breakfast Casserole

    • 🎨 Flavor Profile: Savory egg bake with bacon, cheddar, and spinach - warm, satisfying, and veggie-filled
    • 🔥 Cook Method: Oven-bake in one dish
    • ⏱️ Prep Time: 10 minutes
    • 🕒 Cook Time: 30 minutes
    • 🍽️ Yield: ~6 servings
    • 🌿 Skill Level: Easy to moderate
    • 🔢 Calories: Approximately 325 cal per serving
    • 🥓 Main Ingredients: Eggs, bacon (or turkey bacon), cheddar cheese, fresh spinach, heavy cream, garlic powder, salt & pepper
    • 🎯 Main Benefit: Low-carbohydrate, high-protein breakfast that supports stable energy and a ketogenic lifestyle

    Summarize and Save This Content On

    ChatGPT
    Google AI
    Perplexity
    Grok
    Jump to:
    • ⚡ Quick Look: Keto Breakfast Casserole
    • 💛Why You'll Love It
    • Ingredients for Clean Keto Breakfast Casserole
    • Substitutions and Variations
    • How to Make a Clean Keto Breakfast Casserole
    • Expert Tips
    • Keto Breakfast Casserole FAQ's
    • More Keto Recipes
    • Recipe
    • Comments

    💛Why You'll Love It

    This easy keto breakfast recipe is another gem in our keto collection. It's got the right mix of fluffy eggs, meats, and veggies to satisfy the whole family. This breakfast casserole is a delicious start to any day on a keto diet (or anyone looking to eat healthy, whole-food meals).

    The trick was to get the right ratio of ingredients without bread for the perfect high-protein, low-carb casserole.

    For a variety of flavors, check out our keto egg bites or Starbucks egg white bites.

    Ingredients for Clean Keto Breakfast Casserole

    An array of ingredients for a keto breakfast casserole neatly placed in white bowls on a wooden surface. Ingredients include cut turkey sausage links, shredded pepper jack cheese, crumbled bacon, whisked eggs, chopped red bell pepper, coconut cream, chopped spinach, and diced yellow onions.

    Eggs:  Organic eggs are a powerhouse of nutrition. For the freshest taste and highest quality, select eggs that are both "pasture-raised" and "organic."

    Pepper Jack Cheese: With its creamy texture and spicy flavor, this cheese is a delicious addition to our breakfast casserole. Buy a block and grate it yourself to avoid hidden carbs from added starches.

    Coconut Cream: Coconut cream is a great heavy cream alternative. It is rich and adds a velvety texture to the casserole. Find it next to the canned coconut milk in the grocery store, and stick with organic. It's even cheaper than the heavy cream (which often comes with a long list of ingredients).

    Uncured Bacon: This ingredient adds a rich flavor without unwanted additives. Learn how to pick the best bacon for a keto diet, and always choose unsweetened, uncured, and organic.

    Substitutions and Variations

    Vegetables: Tailor the casserole to your personal preferences by adding different veggies. Think green onions, mushrooms, or even kale for a nutrient boost.

    Egg Bites: For portable breakfasts, add cottage cheese and pour the mixture into a muffin tin to create fluffy egg muffins. This bakes faster at only 25-30 minutes in the oven. Ideal for on-the-go meals or quick snacks.

    How to Make a Clean Keto Breakfast Casserole

    Preheat Oven and Prepare Casserole Dish: Begin by setting your oven to 350°F (175°C). Using a bit of oil or butter, lightly coat the inside of a 9x13-inch baking dish to prevent sticking.

    A skillet with turkey sausage links and bacon strips being cooked, showing the sausage browned and bacon crispy.

    Step 1: Cook bacon in a large skillet over medium heat until crispy. Then, transfer the bacon to paper towels to drain and crumble into small pieces.

    Cook turkey sausage links in the same skillet until they're browned. Then, cut them into ½-inch slices.

    A skillet with sautéed vegetables for a keto breakfast casserole, showing diced onions, red bell peppers, and wilted spinach cooked down and ready to be layered into the casserole.

    Step 2: In the same skillet used for the meat, add your chopped onion and bell pepper.

    Sauté these over medium heat until they've softened, which should take about 5 minutes.

    Introduce the spinach towards the end, just long enough for it to wilt, then remove it from the heat.

    Chopped vegetables including red bell peppers, onions, and spinach layered on top of the meat in a white ceramic baking dish, prepped for a keto breakfast casserole.

    Step 3: In your casserole dish, evenly lay out the sliced sausage and crumbled bacon. Follow this with an even layer of sautéed vegetables on top.

    A close-up view of a clear glass bowl with a whisked mixture of eggs, cream, shredded cheese, seasoned with salt and pepper, ready for a keto breakfast casserole. A black whisk is resting inside the bowl to mix the ingredients.

    Step 4: In a large mixing bowl, vigorously whisk together the eggs, coconut cream, and your seasonings, including salt, pepper, and if you like, a bit of garlic powder. I like to use a hand mixer for this. After that, gently fold in the shredded cheese.

    A breakfast casserole in a red ceramic dish before baking, with the egg mixture poured over chopped meats and diced vegetables, all uncooked and ready to go into the oven.

    Step 5: Gently pour the egg and cheese mixture over the layered meats and vegetables in your baking dish. Make sure it is covered well. Give it a gentle stir to make sure everything is mixed in.

    Baked breakfast casserole in a red ceramic dish showing a golden-brown crust on top with visible chunks of red bell pepper and green spinach scattered throughout.

    Step 6: Put the casserole in the oven. Bake for 35-40 minutes, or until the mixture is firmly set in the center and the top turns a delicious golden brown.

    Use a toothpick to check if done. It should come out clean. If the casserole is "sloshy" give it 5 more minutes!

    Cool and Serve: Before serving, allow the casserole to cool slightly in the dish. This step helps the egg mixture set properly, making the casserole easier to cut into individual portions.

    Expert Tips

    *When preparing the egg mixture for your clean keto breakfast casserole, consider using an immersion blender to combine the eggs and coconut cream. This technique ensures a smooth, thoroughly mixed base, enhancing the fluffy texture of your casserole. Just remember to blend before adding the cheese.

    *When using coconut cream, the best way to get just the cream is to scoop out the thick cream from the top of the can, leaving the lighter coconut water behind. Don't toss it! That coconut water makes a great addition to shakes or smoothies, adding a refreshing twist and extra hydration.

    Keto Breakfast Casserole FAQ's

    What is a typical keto breakfast?

    A typical keto breakfast focuses on low-carb, high-fat foods to keep you in ketosis. It often includes eggs, avocados, and meats like bacon or sausage. Many also enjoy dairy products like cheese and full-fat yogurt. Keto-friendly vegetables like spinach or kale can add fiber and nutrients. Breakfasts can range from simple eggs and bacon to keto pancakes or muffins made with almond or coconut flour. Chia seed pudding with full-fat coconut milk works well, too! As long as you use monk fruit or stevia for the sweetener, and be mindful of your toppings!

    What are the top 5 keto foods?

    The top 5 keto foods that are staples for anyone following the ketogenic diet include:
    Avocados: Rich in healthy fats and fiber, avocados are perfect for keto. They can be eaten alone, used in recipes, or as a topping.
    Eggs: Highly versatile and packed with protein, eggs are essential for keto breakfasts and meals.
    Meats: Fatty cuts of meat like steak, pork, chicken thighs, and especially grass-fed and organic options are keto favorites for their high protein and fat content.
    Leafy Greens: Spinach, kale, and other leafy greens are low in carbs but high in fiber and nutrients, making them ideal for adding volume and vitamins to your meals without adding carbs.
    Cheese: Full-fat cheeses are a delicious way to add fat and flavor to your keto diet. Shredding your own cheese helps to avoid hidden starches.

    How to Store & Reheat Keto Breakfast Casserole

    Store covered in the refrigerator (beeswax wrap works great!) for up to 4 days.
    Can I freeze it?
    Yes! Freeze individual portions in airtight freezer-safe containers for up to 3 months. Thaw overnight in the fridge before reheating.
    What's the best way to reheat?
    Reheat in the oven or a skillet over medium heat until warmed through. In the oven, cover with a lid or baking sheet and heat at 350°F to keep it moist and flavorful.

    A full keto breakfast casserole in a red ceramic baking dish displayed on a wooden table, showing a top view of the baked, golden-brown crust with visible herbs.

    More Keto Recipes

    These are some of my favorite low-carb/ keto recipes:

    • A portion of Keto Spinach Artichoke Chicken Casserole on a plate with asparagus, showcasing the creamy filling.
      Keto Spinach Artichoke Chicken Casserole
    • A complete Keto Chicken Parmesan Casserole on a blue dish, served.
       Lazy Keto Chicken Parmesan Casserole
    • The completed Southern Cajun Smothered Chicken, richly coated in gravy with herbs, served hot straight from the skillet.
      Cajun Smothered Chicken (GF + DF)
    • A plate of spaghetti squash topped with salmon chunks and creamy cajun alfredo sauce, seasoned with black pepper.
      Low-Carb Cajun Salmon Alfredo

    Did you try this clean keto breakfast casserole? Let us know how you liked it in the comments below! Don't forget to leave a 🌟 rating! Subscribe to our weekly newsletter for all the best healthy recipes in your inbox. I look forward to hearing from you!

    Recipe

    A full keto breakfast casserole in a red ceramic baking dish displayed on a wooden table, showing a top view of the baked, golden-brown crust with visible herbs.

    Clean Keto Breakfast Casserole

    Natalie Perry
    This Clean Keto Breakfast Casserole is the perfect low-carb start to your day. An easy recipe that's ideal for those on a low-carb diet, it is a satisfying make-ahead breakfast perfect for busy mornings. Packed with protein and healthy fats, it's a savory keto breakfast to keep you energized.
    5 from 36 votes
    Print Recipe Pin Recipe
    Prep Time 15 minutes mins
    Cook Time 40 minutes mins
    Total Time 55 minutes mins
    Course Breakfast
    Cuisine American
    Servings 8
    Calories 434 kcal

    Equipment

    • 9x13 inch baking dish
    • large skillet
    • Large Mixing Bowl
    • Immersion blender, high-speed blender, or food processor
    • Cheese grater (if grating cheese yourself)

    Ingredients
      

    • 6 oz turkey or chicken breakfast sausage cut into ½ inch pieces
    • 8 slices uncured bacon crumbled
    • 12 eggs pasture-raise, organic
    • 1 cup coconut cream organic, canned
    • 2 cups pepper jack cheese organic, shredded (from a block to avoid preservatives)
    • 1 yellow onion medium, finely chopped
    • 1 red bell pepper organic, diced
    • 1 cup fresh spinach organic
    • 1 teaspoon sea salt
    • ½ teaspoon black pepper organic
    • Optional: ½ teaspoon garlic powder
    InstacartGet Recipe Ingredients

    Instructions
     

    • Preheat Oven and Prepare Pan: Heat your oven to 350°F (175°C). Grease a 9x13 inch baking dish lightly.
    • Cook Meats: In a large skillet over medium heat, cook the bacon until crispy. Transfer to paper towels to drain, then crumble. In the same skillet, cook the sausage pieces until browned. Transfer to the prepared baking dish.
    • Sauté Vegetables: In the skillet, add the onion and bell pepper, cooking until soft, about 5 minutes. Add spinach until just wilted. Evenly spread the vegetable mixture over the meat in the baking dish.
    • Mix Eggs and Cream: In a large mixing bowl, blend the eggs and coconut cream using an immersion blender, high-speed blender, or food processor until smooth. Stir in the shredded cheese by hand.
    • Assemble Casserole: Pour the egg and cheese mixture over the sausage, bacon, and vegetables in the dish. Ensure even coverage.
    • Bake: Bake in the preheated oven for 35-40 minutes, until the casserole is set and the top is lightly golden.
    • Cool and Serve: Let the casserole cool slightly before serving. Garnish with hot sauce, sour cream, and avocados to enhance the flavors.

    Video

    YouTube video

    Notes

    • Using an immersion blender for the eggs and cream can help achieve a smoother, more cohesive mixture.
    • When using coconut cream, open the can and carefully scoop out the cream on top to get the creamiest parts of it and not the watery part.
    • This casserole is perfect for meal prep. Store leftovers in the fridge and reheat on the stovetop, covered, for a delicious meal on a busy day.

    Nutrition

    Calories: 434kcalCarbohydrates: 5gProtein: 24gFat: 36gSaturated Fat: 20gPolyunsaturated Fat: 4gMonounsaturated Fat: 10gTrans Fat: 0.1gCholesterol: 301mgSodium: 831mgPotassium: 385mgFiber: 1gSugar: 2gVitamin A: 1416IUVitamin C: 22mgCalcium: 265mgIron: 3mg
    Tried this recipe?Let us know how it was!

    More Healthy Breakfast Recipes

    • A plate of pumpkin spice energy bites.
      Pumpkin Energy Balls (Easy No-Bake Fall Snack)
    • Pumpkin banana muffins displayed on a plate.
      Pumpkin Banana Bread Muffins
    • A mason jar filled with creamy cashew milk that shows the front of the clear jar as well as slightly some of the top of the jar.
      Cashew Milk Recipe
    • A glass filled with a chocolate smoothie topped with chocolate chips. The smoothie is dark brown and has a thick, creamy consistency. The chocolate chips are semi-sweet and scattered on top of the smoothie.
      Jamba Juice Peanut Butter Chocolate Love

    Comments

      5 from 36 votes (35 ratings without comment)

      Let us know what you think! Cancel reply

      Your email address will not be published. Required fields are marked *

      Recipe Rating




    1. Alexandra says

      February 22, 2024 at 9:16 pm

      5 stars
      This was perfect for my meal prep - simple to prepare, tasty and protein packed. It made for a delicious start to the day.

      Reply
      • Natalie Perry says

        February 23, 2024 at 5:08 pm

        Happy you are enjoying the breakfast casserole, too!

        Reply
    A woman smiling with long brown hair and flowered v-neck dress shirt on.

    Hello there! My name is Natalie. My passion is creating and sharing healthy recipes, tips, and affirmations for a healthy mind and body. I am a wife, mom, certified holistic nutrition specialist, hypnotherapist, reiki master, and healthy food blogger! I enjoy learning, creating, and sharing healthy recipes that the whole family will love.

    Thanks for stopping in! We look forward to hearing how you like our recipes! Welcome to the tribe :)

    Tell me more →

    Popular Recipes

    • A jar of deep red juice with a stalk of celery as a stirrer on a wooden background, suggesting a freshly made beet-based cleanse juice.
      Colon Cleanse Juice Recipe for Gut Health
    • Turmeric lemon juice in a glass.
      Turmeric Lemon Juice Liver Cleanse Recipe 
    • An overhead shot of a fully assembled chia seed pudding dish next to almond butter toast, showcasing the colorful toppings of fresh fruit and granola on the pudding.
      First Watch Chia Pudding Copycat Recipe
    • An acai peanut butter bowl with neat toppings of granola, peanut butter, and sliced fruits including bananas, strawberries, and green apple.
      Nekter Acai Peanut Butter Bowl
    • A tall glass of creamy chia banana boost smoothie on a wooden surface, indicative of a nutritious homemade drink
      Tropical Smoothie Chia Banana Boost Copycat
    • A finished banana boat smoothie in a pina colada glass with a blue striped straw and a banana slice garnish on the side.
      Smoothie King Banana Boat Copycat

    Spring Favorites

    • A strawberry smoothie in a glass with a pineapple garnish.
      Copycat Pineapple Surf Smoothie King
    • A vibrant green smoothie in a glass with a lemon wheel garnishment.
      Tropical Smoothie Cafe Detox Island Green
    • A glass of green juice with light foam at the top.
      First Watch Kale Tonic (Copycat Recipe)
    • Cooked spaghetti squash is topped with a creamy alfredo sauce mixed with chunks of chicken breast. On top is a line of sliced chicken breast garnished with chopped parsley plated with asparagus.
      Keto Chicken Alfredo Spaghetti Squash

    Footer

    ↑ back to top

    About

    • About
    • Privacy Policy
    • Disclaimer
    • Accessibility Policy
    • Terms and Conditions

    Newsletter

    • Sign Up! for emails and updates
    • Learn more about NEST with Natalie courses

    Contact

    • Contact

    This site may contain affiliate links

    Copyright © 2026 Mindfully Healthy Living

    A Pinterest-style image showcasing a completed Keto Meal Prep Breakfast Casserole with text overlays. The top photo shows the casserole in a red baking dish with a golden-brown top, and the bottom photo displays a plated piece of the casserole revealing the colorful layers of vegetables and meat. The text reads "Keto Meal Prep Breakfast Casserole" with the website "mindfullyhealthyliving.com" at the bottom.

    Rate This Recipe

    Your vote:




    Let us know what you thought of this recipe:

    This worked exactly as written, thanks!
    My family loved this!
    Thank you for sharing this recipe

    Or write in your own words:

    A rating is required
    A name is required
    An email is required

    Something went wrong. Please try again.