If you love enchiladas, this Keto Sour Cream Chicken Enchilada Casserole will hit the spot. It's made with shredded chicken, bell peppers, sour cream, green chiles, and a clean enchilada sauce for a comforting meal without the heavy carbs. A few easy whole-food swaps make it just as satisfying - you won't miss the tortillas at all.
Our family loves Mexican food, so I love to develop Mexican-inspired recipes that align with our healthy eating lifestyle without compromising on flavor. Try our Keto Chicken Taco Soup, Keto Green Chile Chicken Casserole, or Keto Chicken Fajita Casserole.
Traditionally, an enchilada recipe calls for corn tortillas. There are low-carb tortillas out there that can be used on a keto diet. However, commercial tortillas often come with hidden ingredients like preservatives and chemical stabilizers, which are contrary to a clean-eating diet and lifestyle and can cause health problems in the long run.
Cauliflower is one of my favorite low-carb swaps for situations like these. It adds a dynamic texture without altering the flavors.
To get started on clean keto and check out a free sample weekly meal plan, our clean keto guide is here!
🎯 Quick Look: Keto Sour Cream Chicken Enchilada Casserole
- 🥬 Key Ingredients: Shredded chicken, bell peppers, green chiles, enchilada sauce, full-fat yogurt or sour cream, shredded block cheese
- ⏱ Time: ~10 min prep | ~45 min cook | ~55 min total
- 🍽 Serves: 4-6
- 😋 Flavor Profile: Creamy, cheesy, mildly spicy, and comforting - classic enchilada flavor without tortillas
- 🌿 Benefits: Low-carb, gluten-free, high-protein, and a great way to add veggies while keeping dinner satisfying
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💛 Why You'll Love It
- All the flavor of enchiladas without the heavy carbs
Uses simple, real-food ingredients
Kid-friendly and picky-eater approved
Reheats well for easy lunches + meal prep
Comfort food that still supports your clean eating goals
Ingredients

Taco Seasoning: Choose organic taco seasoning or create homemade taco seasoning from organic and unprocessed spices. For convenience, we love the Siete brand mild taco seasoning.
Red Enchilada Sauce: Always search for organic and unprocessed if you are purchasing jarred or packaged products to avoid unnecessary ingredients. We like Siete brand red enchilada sauce.
Cheddar Cheese: Organic is best. Get cheese by the block and shred it yourself to avoid hidden starches in pre-shredded cheese, which can affect carbohydrate intake.
Full Fat 5% Fage Yogurt: This full-fat yogurt mimics the consistency of cream cheese with all of the health benefits of yogurt.
See the recipe card for the full list of ingredients and quantities.
Variations and Substitutions
For a vegetarian meal, simply omit the chicken. You can use tempeh or jackfruit in its place for texture.
For extra spicy keto enchiladas, add 1-2 diced and cored jalapenos with the peppers. You can also add a teaspoon of chili powder to the taco seasoning for an extra kick!
How to Make Keto Sour Cream Chicken Enchilada Casserole

Step 1: Season and roast cauliflower florets at 425°F for 20 minutes.

Step 2: Sauté onions, peppers, and garlic in ghee or avocado oil over medium-high heat until softened.

Step 3: Mix shredded chicken, half of the cheese, Fage yogurt, sour cream, green chilies, and taco seasoning. Stir to combine.
Add sautéed vegetables and stir again.

Step 4: In a large baking dish, place an even layer of roasted cauliflower florets and pour the chicken mixture over the cauliflower.

Step 5: Top with a layer of enchilada sauce followed by a layer of cheese.
Place in the oven at 375 degrees for 35 minutes or until cheese is lightly golden brown

Step 6: Remove from oven and let cool for 2-3 minutes. Serve with cilantro, chopped tomatoes, and avocados. Enjoy!
Hint: Do not overfill the casserole dish so it does not overflow when baking in the oven. If there is any leftover chicken mixture, save it in the fridge for another day or split it into two casserole dishes!
Expert Tips
Chop your veggies and shred your chicken while the cauliflower is roasting. When you have about 5 minutes left on the oven timer, heat the ghee in the skillet and begin to saute the vegetables.
Keto Sour Cream Chicken Enchilada Casserole FAQ's
Sour Cream is low in net carbs and high in fat, which makes it an acceptable ingredient in low-carb and keto diets.
Plain Greek yogurt, coconut yogurt, or cottage cheese all work well in place of sour cream in terms of consistency and the creamy flavor sour cream offers.
Sour cream provides the creamy texture and flavor in this enchilada recipe. It can be replaced with greek or coconut yogurt or cottage cheese. Without the sour cream, it will likely still work with a little extra cheese but will produce a different flavor.

More Keto Casseroles
Looking for other recipes like this? Try these:
Tried the Keto Sour Cream Chicken Enchilada Casserole? Give it a 🌟 review and let us know how it went in the comments 👇! Subscribe to our weekly newsletter for all the latest healthy recipes to your inbox! Check out our Clean Keto Meal Plan for Beginners!
Recipe

Keto Sour Cream Chicken Enchilada Casserole
Equipment
- large skillet
- Wooden spoon
- Chefs knife
- cutting board
- Large Mixing Bowl
Ingredients
- 1 lb shredded chicken cooked
- ½ cup sour cream
- 1 1.3 oz packet mild Siete taco seasoning
- 1 15 oz can siete red enchilada sauce
- 1 small red onion minced
- 1 green bell pepper cored and diced
- 1 red bell pepper cored and diced
- 3 garlic cloves minced
- 4 cups shredded Mexican cheese
- 4 oz can hatch green chilies
- 5 oz fage 5% yogurt
- 2 cups cauliflower florets about one head, washed
- 1 tb avocado oil
- ½ teaspoon garlic powder
- ½ teaspoon onion powder
- ⅛ teaspoon Pink Himalayan salt
- ⅛ teaspoon black pepper
- 1 avocado chopped (optional)
- 1 chopped Roma tomato optional
- ½ bunch organic cilantro stems removed and minced
Instructions
- Preheat oven to 425. Put cauliflower florets in a bowl with a lid. Add avocado oil, garlic and onion powder, salt, and pepper. Seal with a lid and shake. Place seasoned cauliflower florets on a parchment paper-lined baking sheet and roast for 20 minutes. Remove from oven and set aside. Reduce oven temp to 375
- Heat ghee in a large skillet on a stovetop on medium high heat. Add onions, bell peppers, and garlic. Sauté for 3 minutes or until softened.
- In a large mixing bowl combine shredded chicken, half of the shredded cheese, fage yogurt, sour cream, green chilies, and taco seasoning. Stir to combine. Add sautéed vegetables and stir again.
- In a large baking dish, place an even layer of roasted cauliflower florets and pour the chicken mixture over the cauliflower.
- Top with an even layer of enchilada sauce followed by a layer of the remaining shredded cheese. Place in the oven at 375 degrees for 35 minutes or until cheese is melted and lightly golden brown
- Remove from oven and let cool for 2-3 minutes. Serve with cilantro, chopped tomatoes and avocados. Enjoy!
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Criss says
Tried this keto sour cream chicken enchilada casserole, and it was so good! Super creamy and satisfying—definitely adding it to my regular meals!
Natalie Perry says
Awesome! Happy to hear you enjoyed it!
Tisha says
This is a great recipe and was so simple to follow. The family loved it!
Natalie Perry says
Thank you for sharing 🙂
Swathi says
Keto sour cream chicken enchilada casserole is so filling and yummy. I love to make it again.
Natalie Perry says
yay!
Sonja says
Oh my god, I love this idea! All the enchilada flavor minus carbs! Just what I need to feel good while eating something that tastes like it should be really bad for me.
Natalie Perry says
It really is good! Let me know how it goes !
Marie-Pierre Breton says
This was fantastic! The kids devoured it, and mama was happy to be low on carbs!
Natalie Perry says
Ah, I can relate! Happy to help 🙂
Liz says
SO yummy!! This was a hit with my family and I loved that it was a keto version.
Natalie Perry says
<3
Juyali says
Absolutely loved this casserole! The roasted cauliflower added a great texture, and the flavors were amazing. Definitely making this again! 😊
Natalie Perry says
Thats awesome to hear!
Natalie Perry says
This recipe was surprisingly delicious! Everyone was coming back for seconds. Yum!